CDS

Accession Number TCMCG016C19282
gbkey CDS
Protein Id OMO67561.1
Location complement(join(64541..65112,65189..65299,65607..67138,67217..67299,67373..67414,67529..67667,68001..68092,68224..68272,68681..68790,68882..69032,69124..69251,69435..69527))
Organism Corchorus capsularis
locus_tag CCACVL1_20453

Protein

Length 1033aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA215142; BioSample:SAMN03290679;
db_source AWWV01012395.1
Definition hypothetical protein CCACVL1_20453 [Corchorus capsularis]
Locus_tag CCACVL1_20453

EGGNOG-MAPPER Annotation

COG_category A
Description RNA binding (RRM RBD RNP motifs) family protein
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko01000        [VIEW IN KEGG]
ko03019        [VIEW IN KEGG]
ko04121        [VIEW IN KEGG]
KEGG_ko ko:K10643        [VIEW IN KEGG]
EC 2.3.2.27        [VIEW IN KEGG]        [VIEW IN INGREDIENT]
KEGG_Pathway ko03018        [VIEW IN KEGG]
map03018        [VIEW IN KEGG]
GOs GO:0000075        [VIEW IN EMBL-EBI]
GO:0000077        [VIEW IN EMBL-EBI]
GO:0000278        [VIEW IN EMBL-EBI]
GO:0000288        [VIEW IN EMBL-EBI]
GO:0000289        [VIEW IN EMBL-EBI]
GO:0000956        [VIEW IN EMBL-EBI]
GO:0002682        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003824        [VIEW IN EMBL-EBI]
GO:0004842        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005737        [VIEW IN EMBL-EBI]
GO:0005829        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006401        [VIEW IN EMBL-EBI]
GO:0006402        [VIEW IN EMBL-EBI]
GO:0006464        [VIEW IN EMBL-EBI]
GO:0006508        [VIEW IN EMBL-EBI]
GO:0006511        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0006950        [VIEW IN EMBL-EBI]
GO:0006974        [VIEW IN EMBL-EBI]
GO:0006977        [VIEW IN EMBL-EBI]
GO:0007049        [VIEW IN EMBL-EBI]
GO:0007093        [VIEW IN EMBL-EBI]
GO:0007154        [VIEW IN EMBL-EBI]
GO:0007165        [VIEW IN EMBL-EBI]
GO:0007346        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0009056        [VIEW IN EMBL-EBI]
GO:0009057        [VIEW IN EMBL-EBI]
GO:0009892        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010468        [VIEW IN EMBL-EBI]
GO:0010564        [VIEW IN EMBL-EBI]
GO:0010605        [VIEW IN EMBL-EBI]
GO:0010629        [VIEW IN EMBL-EBI]
GO:0010948        [VIEW IN EMBL-EBI]
GO:0016070        [VIEW IN EMBL-EBI]
GO:0016071        [VIEW IN EMBL-EBI]
GO:0016567        [VIEW IN EMBL-EBI]
GO:0016740        [VIEW IN EMBL-EBI]
GO:0019222        [VIEW IN EMBL-EBI]
GO:0019439        [VIEW IN EMBL-EBI]
GO:0019538        [VIEW IN EMBL-EBI]
GO:0019787        [VIEW IN EMBL-EBI]
GO:0019941        [VIEW IN EMBL-EBI]
GO:0022402        [VIEW IN EMBL-EBI]
GO:0023052        [VIEW IN EMBL-EBI]
GO:0030163        [VIEW IN EMBL-EBI]
GO:0030330        [VIEW IN EMBL-EBI]
GO:0031570        [VIEW IN EMBL-EBI]
GO:0031571        [VIEW IN EMBL-EBI]
GO:0032446        [VIEW IN EMBL-EBI]
GO:0033554        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0034655        [VIEW IN EMBL-EBI]
GO:0035556        [VIEW IN EMBL-EBI]
GO:0036211        [VIEW IN EMBL-EBI]
GO:0042770        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043412        [VIEW IN EMBL-EBI]
GO:0043632        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044248        [VIEW IN EMBL-EBI]
GO:0044257        [VIEW IN EMBL-EBI]
GO:0044260        [VIEW IN EMBL-EBI]
GO:0044265        [VIEW IN EMBL-EBI]
GO:0044267        [VIEW IN EMBL-EBI]
GO:0044270        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044444        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0044773        [VIEW IN EMBL-EBI]
GO:0044774        [VIEW IN EMBL-EBI]
GO:0044783        [VIEW IN EMBL-EBI]
GO:0044819        [VIEW IN EMBL-EBI]
GO:0045595        [VIEW IN EMBL-EBI]
GO:0045637        [VIEW IN EMBL-EBI]
GO:0045652        [VIEW IN EMBL-EBI]
GO:0045786        [VIEW IN EMBL-EBI]
GO:0045787        [VIEW IN EMBL-EBI]
GO:0045930        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0046700        [VIEW IN EMBL-EBI]
GO:0048518        [VIEW IN EMBL-EBI]
GO:0048519        [VIEW IN EMBL-EBI]
GO:0048522        [VIEW IN EMBL-EBI]
GO:0048523        [VIEW IN EMBL-EBI]
GO:0050789        [VIEW IN EMBL-EBI]
GO:0050793        [VIEW IN EMBL-EBI]
GO:0050794        [VIEW IN EMBL-EBI]
GO:0050896        [VIEW IN EMBL-EBI]
GO:0051239        [VIEW IN EMBL-EBI]
GO:0051603        [VIEW IN EMBL-EBI]
GO:0051716        [VIEW IN EMBL-EBI]
GO:0051726        [VIEW IN EMBL-EBI]
GO:0051865        [VIEW IN EMBL-EBI]
GO:0060255        [VIEW IN EMBL-EBI]
GO:0065007        [VIEW IN EMBL-EBI]
GO:0070647        [VIEW IN EMBL-EBI]
GO:0071156        [VIEW IN EMBL-EBI]
GO:0071158        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0072331        [VIEW IN EMBL-EBI]
GO:0072395        [VIEW IN EMBL-EBI]
GO:0072401        [VIEW IN EMBL-EBI]
GO:0072413        [VIEW IN EMBL-EBI]
GO:0072422        [VIEW IN EMBL-EBI]
GO:0072431        [VIEW IN EMBL-EBI]
GO:0090068        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0140096        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901361        [VIEW IN EMBL-EBI]
GO:1901564        [VIEW IN EMBL-EBI]
GO:1901565        [VIEW IN EMBL-EBI]
GO:1901575        [VIEW IN EMBL-EBI]
GO:1901987        [VIEW IN EMBL-EBI]
GO:1901988        [VIEW IN EMBL-EBI]
GO:1901990        [VIEW IN EMBL-EBI]
GO:1901991        [VIEW IN EMBL-EBI]
GO:1902400        [VIEW IN EMBL-EBI]
GO:1902402        [VIEW IN EMBL-EBI]
GO:1902403        [VIEW IN EMBL-EBI]
GO:1902806        [VIEW IN EMBL-EBI]
GO:1902807        [VIEW IN EMBL-EBI]
GO:1903047        [VIEW IN EMBL-EBI]
GO:1903706        [VIEW IN EMBL-EBI]
GO:2000026        [VIEW IN EMBL-EBI]
GO:2000045        [VIEW IN EMBL-EBI]
GO:2000134        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGAGTGACGAGGGAGAAAGGACTTGCCCCCTTTGTGCTGAGGAGATGGATTTGACTGATCAGCAACTGAAGCCTTGCAAATGTGGATACGAGATATGTGTTTGGTGCTGGCATCACATAATGGATATGGCTGAAAAGGATGAGACTGAGGGGCGGTGTCCAGCATGTCGTAGTGCTTATGATAAAGAAAGGATTGTAGGGATGGCTGCGAATTGTGAGAGGATGGTGGCTGAAATAAATTTTGAGAGAAAGAAGTCACAAAAGGCAAAGACTAAAGCATCTGATGGAAGGAAGCAGCTTAGCAGTGTGCGAGTGATTCAAAGAAATCTTGTTTATATAGTTGGGTTGCCACTTAATCTGGCAGATGAAGATCTTCTCCAACGGCGAGAATATTTTGCTCAGTATGGGAAAGTCCTTAAAGTATCTATGTCTCGGACTGCAGCTGGTGTAATCCAGCAATTTCCAAACAATACATGTAGTGTGGCGTGCTTTGGAACAACAAAGTATTGTCATGCATGGCTGAGAAATGTGCCTTGCAGCAATCCTGATTGTCTATATTTGCATGAGATTGGTTCTCAAGAGGATAGTTTTACCAAAGACGAGATTATATCAGCATACACAAGGAGTAGGGTTCAACAAATAACGGGTGCAACAAATAATATGCAACGGCGTGCTGGGAATATGCTACCTCCTCCAATCGATGATTATTGCCCCAATAGTTCTACTTCTGCGGCAAAACCTATAGCAAAAAGTGCTCCTAATTTTTTACCTTGGGCAATTGCTAGAAAATCTGTTGAGGATGAGAATACTACCGCAAATATTCCTAAAGATTCTCCTCCAAATGGAAGCTCTGGTAGATCTATGGCTCTTCCTGCTGGTGCATCATGGGGAATGCGTGCTTTAAACCAGCCACAATCGGCCGGTTTAGCATGTTCAAATGGGCCTTCTAAGCAGAAATCTGATACTTGCAGCACGTTACCATTTTCATCTGCAGTTGCAAACACAAGTCAGGTTTCTACATTACATAGTGATTTTATAAAGAAGCCATTGGAGGAGATACATGCTATACATATTAAGGGTAAACATGATTTGTTAAAACCCTTACAACAGAATGCTGGTTTAGATAGTCAAACTCCTGCAGTGGAGAAACCTACTTCACCTGATGGAGTTTCGGCTTCTAAATCACTGAATAGCCAATTATCTTGTCCGCCATCATCCAATTATAGTGACCAGGGAACTAATATACCATCAACTGTTACAAGCTCCACATTTGACCAAGTTGGGCAGTCTTTTATTTCCTCTAGTGAAAAAGAGGGGAATGTTTGTGCTACAGATGGGAAGGTACAGAGCTTGTGCTCTGATATGTCAACATTGACCTTAGATAGAAATATATTGAATGGACATTCTGGTGTAGTTAGACCAAGCAGTTCGACTTCTGATCATGGATCAAGCAGCTCACCTAGTAGTCAGGGGTTACAACAATGTTATATTGAGCAGTATCGAGAACCATTAAATTCTGCAACCACAGGGAGATCTGTGACATCTCCCAATGGGGTGTGCATTTCGAAAGAGCACTCTGAATGGAGAACTGATACACAAACACAAGCAATTGCAAACTCGAGTTCTGAAGTAGAGGAAGACATATTGTCTTTTGATAGTCAAAGACTCAAGGATCCAGAAGTTGTTAGCCGTTCAAGTTATGTGCCAAATTCACCAAGTTCACTCCATTTATCAAATCATTCAAGGTCCCATTCTTTGCAACATAGTGAAGCCTTTGGTGCTGTGAATTTGAACACTGATACTCTCTTTGTAGATAATAAAGTTAGTGACAGTTTACGTCTTCATGGACCTAGTGTTTCTTCTTTATCAAATGGATACCCTGAGAATTACCTAAGCAGTGGTATTGGTTCTGATATTACCGCAGAAGGCTCCCGTCTGCTTCCAATAGAAGGTAGAGGGAGGCAGATGGGAAGATTCTTTTGTAATGCTGAAAGCAATGCTGCTAAAGATACAGGAGAGAGCAGCATAATCTCAAACATATTATCGTTAGATCTTGATACATGGGATGAGCCCCTAACTTCACCTCAGAACTTGGCTAAATTGTTGGGTGACAATGAGAAGCAGCAGGCCAATTATCTCAAATTATCCAGTTCCTGGAAAGCACCGAATAATAATAATCAGTCCAGATTCTCATTTGCGAGACAGGAGGATTCAAGATATTACCCATTTGATGTTGAGTCCTCATTCAATGTTTTTGGGCAAATGCAAAGGAACCGCCCTTCCAGCCAAGATTTTGCAGAGAGCAGGGACCTCTATCTTAATAAGTTAGGAATTCCTAATGGGTTTTCTTCCAGTAACTTTGAGGACTCTGACAGTTTTAACAGCAATCCTTCAGTTTTTTCTTCCAATAAGGTTTCTGTTTCAAGAGCTCCGATTTCAGCCCCACCTGGATTCTCTGTTCCTAGCAGGGCACCACCTCCAGGGTTTTCTTCTCATGAGAGAGTAGATCATGCATTTGACTCCACTTCTGGAAATTATTTGGTGGACTCGTCCCTGTTGAGAAATTCTTATCAAGCTCAGCCGGGTGGTGGTATTGGTGGGGATATTGAATTTATGGATCCAGCAATCTTGGCTGTTGGTAAAGGTAGACTTCAGGGAGGGCTCAACAATTCGGGCTTAGACATGAGATCAAATTATCCACAACAGTTAGGTCCATATGAAAATGATGCCAGATTACAACTATTGATGCAGAGATCACTCTCTCCTCGTCAGAACCTGAGATATGATGTCGGGGATAGCTATTCTTCTCTTAATGACTCCTATGGAATATCTTCTAGGCTAATGGATCATTCACAAGTGAACAATATGTCCCCTTTCTCACAGTTGTCTGTCCAACAAGTACAACCAAGGAATACACATACACACATGTCAAATGGTCATTGGGATGGATGGAATGAGGTTCAGGGTGGAAATGGTCTCGGTGTGGCAGAGCTCCTCCGAAATGAGAGACTGGGCTATAACAAGTTCTATAATGGTTACGAAGATTCAAAGTACAGGATGCCCACATCTGGGGATCTGTATAACAGAACATTTGGAATGTGA
Protein:  
MSDEGERTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKDETEGRCPACRSAYDKERIVGMAANCERMVAEINFERKKSQKAKTKASDGRKQLSSVRVIQRNLVYIVGLPLNLADEDLLQRREYFAQYGKVLKVSMSRTAAGVIQQFPNNTCSVACFGTTKYCHAWLRNVPCSNPDCLYLHEIGSQEDSFTKDEIISAYTRSRVQQITGATNNMQRRAGNMLPPPIDDYCPNSSTSAAKPIAKSAPNFLPWAIARKSVEDENTTANIPKDSPPNGSSGRSMALPAGASWGMRALNQPQSAGLACSNGPSKQKSDTCSTLPFSSAVANTSQVSTLHSDFIKKPLEEIHAIHIKGKHDLLKPLQQNAGLDSQTPAVEKPTSPDGVSASKSLNSQLSCPPSSNYSDQGTNIPSTVTSSTFDQVGQSFISSSEKEGNVCATDGKVQSLCSDMSTLTLDRNILNGHSGVVRPSSSTSDHGSSSSPSSQGLQQCYIEQYREPLNSATTGRSVTSPNGVCISKEHSEWRTDTQTQAIANSSSEVEEDILSFDSQRLKDPEVVSRSSYVPNSPSSLHLSNHSRSHSLQHSEAFGAVNLNTDTLFVDNKVSDSLRLHGPSVSSLSNGYPENYLSSGIGSDITAEGSRLLPIEGRGRQMGRFFCNAESNAAKDTGESSIISNILSLDLDTWDEPLTSPQNLAKLLGDNEKQQANYLKLSSSWKAPNNNNQSRFSFARQEDSRYYPFDVESSFNVFGQMQRNRPSSQDFAESRDLYLNKLGIPNGFSSSNFEDSDSFNSNPSVFSSNKVSVSRAPISAPPGFSVPSRAPPPGFSSHERVDHAFDSTSGNYLVDSSLLRNSYQAQPGGGIGGDIEFMDPAILAVGKGRLQGGLNNSGLDMRSNYPQQLGPYENDARLQLLMQRSLSPRQNLRYDVGDSYSSLNDSYGISSRLMDHSQVNNMSPFSQLSVQQVQPRNTHTHMSNGHWDGWNEVQGGNGLGVAELLRNERLGYNKFYNGYEDSKYRMPTSGDLYNRTFGM